Welcome to AlphaFragment’s documentation!¶
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Contents:
- Setting up custom classes
- Handle protein objects and domains in a csv file
- Identifying protein domains using AlphaFoldDB
- Handle data from UniProt
- Find and compile protein domains from various sources (AlphaFold, UniProt, manually defined)
- Utility functions for protein fragmentation
- Dealing with long domains
- Protein fragmentation
- Plot fragmentation output
- Create input files for AlphaFold or AlphaPulldown