Index

AlphaFragment

Setting up custom classes
Handle protein objects and domains in a csv file
Identifying protein domains using AlphaFoldDB
Handle data from UniProt
Find and compile protein domains from various sources (AlphaFold, UniProt, manually defined)
Utility functions for protein fragmentation
Dealing with long domains
Protein fragmentation
Plot fragmentation output
Create input files for AlphaFold or AlphaPulldown