Logo
  • Introduction
  • Installation
  • Usage Guide

Detailed function documentation

  • Custom classes
  • Handling protein objects and domains in a csv file
  • Identifying protein domains using AlphaFoldDB
  • Handling data from UniProt
  • Compiling domains from various sources
  • Utility functions for protein fragmentation
  • Dealing with long domains
  • Protein fragmentation
  • Plotting fragmentation output
  • Creating input files for AlphaFold or AlphaPulldown
AlphaFragment
  • Python Module Index

Python Module Index

a
 
a
- alphafragment
    alphafragment.alphafold_db_domain_identification
    alphafragment.classes
    alphafragment.domain_compilation
    alphafragment.fragment_file_creation
    alphafragment.fragment_protein
    alphafragment.fragmentation_methods
    alphafragment.long_domains
    alphafragment.plot_fragments
    alphafragment.process_proteins_csv
    alphafragment.uniprot_fetch

© Copyright 2024, Ingelise Holland-Kaye.

Built with Sphinx using a theme provided by Read the Docs.