.. AlphaFragment documentation master file, created by
   sphinx-quickstart on Fri Mar 22 12:53:39 2024.

.. raw:: html

    <div class="homepage-banner">
        <img src="_static/banner.png" alt="AlphaFragment Banner" style="width: 100%;">
    </div>

Welcome to the official documentation for **AlphaFragment**, a Python package
designed to optimally fragment proteins and streamline the preparation of
protein data for structure prediction.

.. toctree::
   :maxdepth: 2

   introduction
   installation
   usage_guide

.. toctree::
   :maxdepth: 2
   :caption: Detailed function documentation

   classes
   process_proteins_csv
   alphafold_db_domain_identification
   uniprot_fetch
   domain_compilation
   fragmentation_methods
   long_domains
   fragment_protein
   plot_fragments
   fragment_file_creation

Indices and Tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`